PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088963.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 299aa    MW: 34310.6 Da    PI: 8.313
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088963.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.2e-35151072103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ +++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+  ++         weF++++F+kg k+ll++
  XP_010088963.1  15 FLTKTYQLVDDPLTDHVVSWGDDHTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKIVADR---------WEFSNEYFRKGAKHLLSE 100
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_010088963.1 101 IHRRKTS 107
                     ****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-37698IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5511104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3212104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.3E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVFTVESQKA VPAPFLTKTY QLVDDPLTDH VVSWGDDHTT FVVWRPPEFA RDLLPNYFKH  60
NNFSSFVRQL NTYGFKKIVA DRWEFSNEYF RKGAKHLLSE IHRRKTSQQH QQPQNYHHHH  120
HDHLLMNSHF FQALDHDHHK TSTNFGWNNI NILETSSLAP SPKTCTSDDH NILTSLTEDN  180
QRLRRKNFLL LSELTHMKSL YNDIIYFIQN HVKPVMPSTL SPISTVNSSS IPKLVGLGSS  240
SPVPAVSEVK TMAISEICGS GNSREISEEK NGGVKLFGVS LSGRKRLHPE KTDHNYELD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-221110717123Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088963.10.0Heat stress transcription factor B-4
SwissprotQ9C6355e-88HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLW9QRV60.0W9QRV6_9R
STRINGPOPTR_0001s28040.11e-113(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-85heat shock transcription factor B4